When moving between RStudio releases there are some differences that require either user intervention or caution.
Why should I upgrade?
Upgrading to the latest version of RStudio has a number of benefits, including a new version of R and improved package management options.
2.2.6 to 3.0.12
As Conda has now been removed. You will need to install packages using Renv. See package management
- Please unidle your RStudio if it is currently idled
- Select RStudio 3.0.12 from the drop down and click yes on the prompt to install
dbtools (i.e. the R wrapper for
pydbtools) requires a little setup:
This will create a virtualenv for your project, which should be stored in the folder renv/python/virtualenvs/renv-python-3.8.5/, and associate reticulate with that virtualenv.
pydbtoolsinto that environment
You can either do that with
reticulate::py_install("pydbtools"), or if you prefer the terminal, you can activate that virtualenv with the command renv/python/virtualenvs/renv-python-3.8.5/bin/activate.
Install dbtools using